Educational guide Faculty of Oenology |
english |
Bachelor's Degree in Biotechnology (2009) |
Subjects |
BIOCOMPUTING |
Contents |
IDENTIFYING DATA | 2018_19 |
Subject | BIOCOMPUTING | Code | 19204103 | |||||
Study programme |
|
Cycle | 1st | |||||
Descriptors | Credits | Type | Year | Period | ||||
6 | Compulsory | Second | 2Q |
Competences | Learning outcomes | Contents |
Planning | Methodologies | Personalized attention |
Assessment | Sources of information | Recommendations |
Topic | Sub-topic |
1) Introduction | Definition and field of study. Bioinformatics Web sites (EBI-EMBL, NCBI, Expasy). |
2) Introduction to the Linux operating system | Introduction to the operating systems. Installing packages. Terminal for simple tasks. |
3) Bioinformatics databases | Bibliographic databases (PubMed, ISI Web of Knowledge), sequences databases (UniProt, GenBank). Other databases. |
4) Search and sequence analysis | Concept of homology. Pair-wise alignments (Needelman-Wunsch and Smith-Waterman algorithms). Dotplot. Substitution matrices (PAM, BLOSUM). Search for similar sequences (BLAST). |
5) Multiple alignments and construction of phylogenetic trees | Multiple sequence alignment programs (CLUSTAL). Databases derived from multialineaments (PROSITE). Methods of phylogenetic reconstruction. Visualization of phylogenetic trees. |