| Educational guide Faculty of Oenology |
english |
| Bachelor's Degree in Biotechnology (2009) |
 Subjects |
| BIOCOMPUTING |
| Contents |
| IDENTIFYING DATA | 2018_19 |
| Subject | BIOCOMPUTING | Code | 19204103 | |||||
| Study programme |
|
Cycle | 1st | |||||
| Descriptors | Credits | Type | Year | Period | ||||
| 6 | Compulsory | Second | 2Q |
|||||
| Competences | Learning outcomes | Contents |
| Planning | Methodologies | Personalized attention |
| Assessment | Sources of information | Recommendations |
| Topic | Sub-topic |
| 1) Introduction | Definition and field of study. Bioinformatics Web sites (EBI-EMBL, NCBI, Expasy). |
| 2) Introduction to the Linux operating system | Introduction to the operating systems. Installing packages. Terminal for simple tasks. |
| 3) Bioinformatics databases | Bibliographic databases (PubMed, ISI Web of Knowledge), sequences databases (UniProt, GenBank). Other databases. |
| 4) Search and sequence analysis | Concept of homology. Pair-wise alignments (Needelman-Wunsch and Smith-Waterman algorithms). Dotplot. Substitution matrices (PAM, BLOSUM). Search for similar sequences (BLAST). |
| 5) Multiple alignments and construction of phylogenetic trees | Multiple sequence alignment programs (CLUSTAL). Databases derived from multialineaments (PROSITE). Methods of phylogenetic reconstruction. Visualization of phylogenetic trees. |
